Chords the whole way through this first part:
       Gm              F               C              A#sus2
E|-------3--------------1---------------3--------------1-----------------|
B|-------3--------------1---------------5--------------1-----------------|
G|-------3--------------2---------------5--------------3-----------------|
D|-------5--------------3---------------5--------------3-----------------|
A|-------5--------------3---------------3--------------1-----------------|
E|-------3--------------1------------------------------------------------|

There is also a lead bit that goes like:

E|------------------------------------------------|
B|---15------11-----13----------------------------|
G|-------------------------8/10-------------------| x4
D|------------------------------------------------|
A|------------------------------------------------|
E|------------------------------------------------|

Part 2,
The Sunlight through the flags.

This bit is repeated through out the section:
E|-----------------------------------------------------|
B|-----------------------------------------------------|
G|--13--11------13--11------13--11------13--11---------|
D|----------11----------11----------11----------11-----|
A|-----------------------------------------------------|
E|-----------------------------------------------------|

Another lead comes in over it on keyboard but I just havent got that yet.

The chords:
       E5  X8       Eb aug5 X4         C#5  X4
E|-------------------------------------------------|
B|-------------------------------------------------|
G|------9----------------8----------------6--------|
D|------9----------------9----------------6--------|
A|------7----------------6----------------4--------|
E|-------------------------------------------------|

Another lead bit:

Repeat as necessary:
E|---12--9----------12--9--------------------------|
B|----------12--(9)--------12--(9)-----------------|
G|-------------------------------------------------|
D|-------------------------------------------------|
A|-------------------------------------------------|
E|-------------------------------------------------|

I dont have the distorted guitar yet either.

Part 3,
Daybreak.

Chords: (repeat through the whole section)
       D X16                     G X16
E|------3--------------------------3----------------|
B|------2--------------------------3----------------|
G|------3--------------------------0----------------|
D|------0--------------------------0----------------|
A|---------------------------------2----------------|
E|---------------------------------3----------------|

I suppose you could fingerpick it to make it more mellow like the track?
Something like:

E|----x---------x---------x---------x--------------|
B|------x---------x---------x---------x------------|
G|--------x---------x---------x---------x----------| X2 for the D chord
D|-x----------x---------x---------x----------------|
A|-------------------------------------------------|
E|-------------------------------------------------|

E|---x---------x----------x----------x-------------|
B|-------x---------x----------x----------x---------|
G|-----x---------x----------x----------x-----------| X2 for the G chord
D|-------------------------------------------------|
A|-------------------------------------------------|
E|-x---------x----------x----------x---------------|

Then at 11:50 or "somethin was bound to right sometime today" come in on a
second guitar with the D, E and G power chords:
           D5 X14  E5 X2    G5 X16
E|--------------------------------------------------|
B|--------------------------------------------------|
G|-----------7------9-------------------------------| X4
D|-----------7------9---------5---------------------|
A|-----------5------7---------5---------------------|
E|----------------------------3---------------------|

           D5 X16      G5 X16
E|-------------------------------------------------|
B|-------------------------------------------------|
G|-----------7-------------------------------------| X4
D|-----------7---------------5---------------------|
A|-----------5---------------5---------------------|
E|---------------------------3---------------------|

Then back to:
           D5 X14  E5 X2    G5 X16
E|--------------------------------------------------|
B|--------------------------------------------------|
G|-----------7------9-------------------------------| till finish.
D|-----------7------9---------5---------------------|
A|-----------5------7---------5---------------------|
E|----------------------------3---------------------|